SMTL ID : 5lw1.1 (2 other biounits)

Crystal structure of DARPin-DARPin rigid fusion, variant DD_232_11_D12 in complex JNK1a1 and JIP1 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

7 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 4 residues within 4Å: Chain A: G.215, H.216, L.217, G.218 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.217, A:G.218 SO4.2: 4 residues within 4Å: Chain A: F.89, H.123, H.125 Chain B: Y.240 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.123 Salt bridges: A:H.123, A:H.125 SO4.4: 2 residues within 4Å: Chain B: K.260, R.267 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:K.260, B:R.267 SO4.5: 1 residues within 4Å: Chain B: R.137 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.137 SO4.6: 4 residues within 4Å: Chain B: S.189, R.199, R.202, Y.240 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.188, B:S.189 Salt bridges: B:R.199, B:R.202 SO4.7: 5 residues within 4Å: Chain B: M.191, T.193, V.196, V.197, T.198 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:T.193, B:T.198, B:T.198 SO4.8: 2 residues within 4Å: Chain B: T.358, I.359 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:I.359

1 x ADN: ADENOSINE(Non-covalent)

ADN.3: 11 residues within 4Å: Chain B: I.42, G.43, V.50, A.63, I.96, M.118, E.119, M.121, N.124, S.165, L.178 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:E.119, B:M.121, B:N.124, B:S.165

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural Basis for the Selective Inhibition of c-Jun N-Terminal Kinase 1 Determined by Rigid DARPin-DARPin Fusions. J.Mol.Biol. (2018)

Release Date

2017-12-13

Peptides

DD_232_11_D12: A
Mitogen-activated protein kinase 8: B
C-Jun-amino-terminal kinase-interacting protein 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

DD_232_11_D12

Mitogen-activated protein kinase 8

C-Jun-amino-terminal kinase-interacting protein 1

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