SMTL ID : 5lw1.3 (2 other biounits)

Crystal structure of DARPin-DARPin rigid fusion, variant DD_232_11_D12 in complex JNK1a1 and JIP1 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x IVA- VAL- VAL- STA- ALA- STA: Pepstatin(Non-covalent)

IVA-VAL-VAL-STA-ALA-STA.1: 12 residues within 4Å: Chain A: F.89, L.114, I.122, H.123, L.152, N.156 Chain B: T.188, G.209, G.211, Y.240, I.241, K.261 8 PLIP interactions: 5 interactions with chain A, 3 interactions with chain B Hydrophobic interactions: A:L.114, A:I.122, A:I.122, A:L.152, A:L.152, B:T.188, B:Y.240 Hydrogen bonds: B:G.211

9 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: G.215, H.216, L.217, G.218 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.215, A:L.217, A:G.218 SO4.3: 3 residues within 4Å: Chain A: K.16, D.44, Q.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.45 Salt bridges: A:K.16 SO4.4: 4 residues within 4Å: Chain A: G.281, H.282, L.283, E.284 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.283, A:E.284 SO4.5: 2 residues within 4Å: Chain A: V.263, N.264 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.263, A:N.264, A:N.264 SO4.7: 3 residues within 4Å: Chain B: R.199, R.202, Y.240 2 PLIP interactions: 2 interactions with chain B Salt bridges: B:R.199, B:R.202 SO4.8: 3 residues within 4Å: Chain A: R.111 Chain B: K.260, R.267 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Salt bridges: B:K.260, B:R.267, A:R.111 SO4.9: 2 residues within 4Å: Chain B: K.300, Q.303 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.303 Salt bridges: B:K.300 SO4.10: 2 residues within 4Å: Chain B: Y.21, S.22 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:S.22, B:S.22 SO4.11: 4 residues within 4Å: Chain B: D.122, A.123 Chain C: L.8, N.9 No protein-ligand interaction detected (PLIP)

1 x ADN: ADENOSINE(Non-covalent)

ADN.6: 12 residues within 4Å: Chain B: G.43, S.44, V.50, A.63, M.118, E.119, L.120, M.121, N.124, S.165, V.168, L.178 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:E.119, B:M.121, B:N.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wu, Y. et al., Structural Basis for the Selective Inhibition of c-Jun N-Terminal Kinase 1 Determined by Rigid DARPin-DARPin Fusions. J.Mol.Biol. (2018)

Release Date

2017-12-13

Peptides

DD_232_11_D12: A
Mitogen-activated protein kinase 8: B
C-Jun-amino-terminal kinase-interacting protein 1: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
H

C
I

DD_232_11_D12

Mitogen-activated protein kinase 8

C-Jun-amino-terminal kinase-interacting protein 1

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