SMTL ID : 5lwz.1 (1 other biounit)

Cys-Gly dipeptidase GliJ (space group C2)

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

homo-dimer

Ligands

4 x FE: FE (III) ION(Non-covalent)

FE.1: 5 residues within 4Å: Chain A: E.147, H.216, H.237, D.307 Ligands: FE.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.147, A:H.216, A:H.237, H2O.2, H2O.4 FE.2: 5 residues within 4Å: Chain A: H.36, D.38, E.147, D.307 Ligands: FE.1 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.36, A:D.38, A:D.38, A:E.147, H2O.4 FE.5: 4 residues within 4Å: Chain B: E.147, H.216, H.237 Ligands: FE.6 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.147, B:H.216, B:H.237, H2O.7, H2O.8 FE.6: 5 residues within 4Å: Chain B: H.36, D.38, E.147, D.307 Ligands: FE.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:H.36, B:D.38, B:D.38, B:E.147, H2O.10

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: W.46 Chain B: K.384 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.384, B:K.384 GOL.4: 5 residues within 4Å: Chain A: G.317, S.322, C.323, P.325, A.326 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.317, A:A.326 GOL.7: 2 residues within 4Å: Chain A: K.384 Chain B: W.46 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.384, A:K.384 GOL.8: 2 residues within 4Å: Chain B: Y.241, T.251 2 PLIP interactions: 2 interactions with chain B Water bridges: B:H.219, B:Y.241

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marion, A. et al., Gliotoxin Biosynthesis: Structure, Mechanism, and Metal Promiscuity of Carboxypeptidase GliJ. ACS Chem. Biol. (2017)

Release Date

2017-05-31

Peptides

Dipeptidase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Dipeptidase

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