SMTL ID : 5ns1.1

Cys-Gly dipeptidase GliJ in complex with Ni2+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x NI: NICKEL (II) ION(Non-covalent)

NI.1: 5 residues within 4Å: Chain A: E.147, H.216, H.237, D.307 Ligands: NI.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.147, A:H.216, A:H.237, H2O.3 NI.2: 6 residues within 4Å: Chain A: H.36, D.38, S.82, E.147, D.307 Ligands: NI.1 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.36, A:D.38, A:D.38, A:E.147 NI.4: 5 residues within 4Å: Chain B: E.147, H.216, H.237, D.307 Ligands: NI.5 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.147, B:H.216, B:H.237, H2O.6 NI.5: 6 residues within 4Å: Chain B: H.36, D.38, S.82, E.147, D.307 Ligands: NI.4 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:H.36, B:D.38, B:D.38, B:E.147

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.6: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Marion, A. et al., Gliotoxin Biosynthesis: Structure, Mechanism, and Metal Promiscuity of Carboxypeptidase GliJ. ACS Chem. Biol. (2017)

Release Date

2017-05-31

Peptides

Dipeptidase gliJ: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Dipeptidase gliJ

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