SMTL ID : 5lyd.1

Crystal structure of 1 in complex with tafCPB

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

monomer

Ligands

5 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.66, E.69, H.194 Ligands: 7B0.6 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.66, A:E.69, A:E.69, A:H.194 ZN.2: 3 residues within 4Å: Chain A: R.81, E.82, E.289 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:E.82, A:E.289, A:E.289 ZN.3: 1 residues within 4Å: Chain A: H.305 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.305, H2O.11 ZN.4: 3 residues within 4Å: Chain A: H.199, T.237, T.244 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.199, A:T.244, H2O.7 ZN.5: 1 residues within 4Å: Chain A: H.92 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:H.92, H2O.5, H2O.8, H2O.10

1 x 7B0: (2~{S})-6-azanyl-2-(sulfamoylamino)hexanoic acid(Non-covalent)

7B0.6: 15 residues within 4Å: Chain A: H.66, E.69, R.124, N.141, R.142, H.194, S.195, S.205, L.245, Y.246, A.248, D.253, T.266, E.268 Ligands: ZN.1 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:L.245, A:A.248, A:T.266 Hydrogen bonds: A:R.124, A:R.124, A:N.141, A:Y.246, A:T.266, A:T.266, A:E.268, A:E.268 Water bridges: A:R.68 Salt bridges: A:H.66, A:R.124, A:R.142

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halland, N. et al., Sulfamide as Zinc Binding Motif in Small Molecule Inhibitors of Activated Thrombin Activatable Fibrinolysis Inhibitor (TAFIa). J. Med. Chem. (2016)

Release Date

2016-10-26

Peptides

Carboxypeptidase B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carboxypeptidase B

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