SMTL ID : 5lz8.1

Fragment-based inhibitors of Lipoprotein associated Phospholipase A2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.11 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 4 residues within 4Å: Chain A: Y.276, F.277, V.305, H.306 Ligand excluded by PLIP CL.2: 3 residues within 4Å: Chain A: Y.279, P.280, A.281 Ligand excluded by PLIP

1 x 7BP: 5-[2-[(4~{S})-4-~{tert}-butyl-2-oxidanylidene-pyrrolidin-1-yl]ethoxy]-2-fluoranyl-benzenecarbonitrile(Non-covalent)

7BP.3: 18 residues within 4Å: Chain A: L.62, F.65, G.107, L.108, G.109, A.110, L.114, Y.115, H.227, S.228, F.229, W.253, F.277, H.306, Q.307, A.310, D.311, F.312 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.65, A:L.108, A:A.110, A:W.253, A:W.253, A:F.277, A:A.310 Hydrogen bonds: A:L.108, A:F.229, A:Q.307, A:D.311, A:F.312 Water bridges: A:T.313

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Woolford, A.J. et al., Fragment-Based Approach to the Development of an Orally Bioavailable Lactam Inhibitor of Lipoprotein-Associated Phospholipase A2 (Lp-PLA2). J. Med. Chem. (2016)

Release Date

2016-12-21

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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