SMTL ID : 5m37.1

The molecular tweezer CLR01 stabilizes a disordered protein-protein interface

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

hetero-2-2-mer

Ligands

4 x 9SZ: (1R,5S,9S,16R,20R,24S,28S,35R)-3,22-Bis(dihydroxyphosphoryloxy)tridecacyclo[22.14.1.15,20.19,16.128,35.02,23.04,21.06,19.08,17.010,15.025,38.027,36.029,34]dotetraconta-2(23),3,6,8(17),10,12,14,18,21,25,27(36),29,31,33,37-pentadecaene(Non-covalent)

9SZ.1: 3 residues within 4Å: Chain A: N.183, P.185 Ligands: 9SZ.6 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:N.183, A:P.185 Hydrogen bonds: A:N.183 Salt bridges: A:K.138 9SZ.3: 5 residues within 4Å: Chain A: E.5 Chain B: E.73, K.74, Q.77, M.78 13 PLIP interactions: 12 interactions with chain B, 1 interactions with chain A Hydrophobic interactions: B:K.74, B:K.74, B:K.74, B:K.74, B:K.74, B:Q.77, A:E.5 Salt bridges: B:K.74 pi-Cation interactions: B:K.74, B:K.74, B:K.74, B:K.74, B:K.74 9SZ.5: 10 residues within 4Å: Chain B: W.59, R.60, S.63, Q.67, Y.179, E.180, N.183 Chain C: R.2, S.3, Y.6 11 PLIP interactions: 4 interactions with chain B, 7 interactions with chain C Hydrophobic interactions: B:W.59, B:Y.179, B:E.180, B:E.180, C:Y.6 Salt bridges: C:R.2 pi-Cation interactions: C:R.2, C:R.2, C:R.2, C:R.2, C:R.2 9SZ.6: 10 residues within 4Å: Chain A: W.59, R.60, S.63, Q.67, Y.179, E.180 Chain D: R.2, S.3, Y.6 Ligands: 9SZ.1 12 PLIP interactions: 8 interactions with chain D, 4 interactions with chain A Hydrophobic interactions: D:R.2, D:Y.6, A:W.59, A:Y.179, A:E.180, A:E.180 Salt bridges: D:R.2 pi-Cation interactions: D:R.2, D:R.2, D:R.2, D:R.2, D:R.2

2 x BEZ: BENZOIC ACID(Non-covalent)

BEZ.2: 4 residues within 4Å: Chain A: F.196, M.218, Q.219, R.222 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.196, A:M.218, A:Q.219 Salt bridges: A:R.222 BEZ.4: 4 residues within 4Å: Chain B: F.196, M.218, Q.219, R.222 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:F.196, B:Q.219 Salt bridges: B:R.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Bier, D. et al., The Molecular Tweezer CLR01 Stabilizes a Disordered Protein-Protein Interface. J. Am. Chem. Soc. (2017)

Release Date

2017-11-15

Peptides

14-3-3 protein zeta/delta: AB
M-phase inducer phosphatase 3: CD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

14-3-3 protein zeta/delta

M-phase inducer phosphatase 3

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