SMTL ID : 6rlz.1

Crystal Structure of 14-3-3zeta in complex with a macrocyclic 8-mer peptide derived from ExoS

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.70 Å

Oligo State

homo-dimer

Ligands

2 x GLY- R6E- LEU- ASP- 6ZS- LEU- ASP- LEU: EtMe(Non-covalent)

GLY-R6E-LEU-ASP-6ZS-LEU-ASP-LEU.1: 16 residues within 4Å: Chain A: N.42, S.45, V.46, K.49, F.117, K.120, D.124, Y.125, Y.128, P.165, G.169, L.172, D.213, L.216, I.217, L.220 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:V.46, A:K.49, A:F.117, A:D.213, A:L.216, A:I.217, A:I.217, A:L.220 Hydrogen bonds: A:S.45, A:K.120, A:Y.128 Water bridges: A:R.56 Salt bridges: A:K.49 GLY-R6E-LEU-ASP-6ZS-LEU-ASP-LEU.2: 14 residues within 4Å: Chain B: R.41, S.45, K.49, N.50, F.117, D.124, Y.125, Y.128, P.165, I.166, G.169, L.172, N.173, I.217 6 PLIP interactions: 6 interactions with chain B Hydrophobic interactions: B:F.117, B:P.165 Hydrogen bonds: B:S.45, B:N.50, B:Y.128, B:N.173

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wallraven, K. et al., Adapting free energy perturbation simulations for large macrocyclic ligands: how to dissect contributions from direct binding and free ligand flexibility. Chem Sci (2020)

Release Date

2020-03-18

Peptides

14-3-3 protein zeta/delta: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

14-3-3 protein zeta/delta

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