SMTL ID : 5m4k.1

Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x TF3: N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE(Non-covalent)

TF3.1: 11 residues within 4Å: Chain A: L.72, P.73, R.75, V.76, V.82, G.134, V.135, Y.138, N.151, I.152, L.156 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:L.72, A:V.76, A:V.76, A:V.82, A:V.135, A:Y.138, A:I.152, A:L.156 Hydrogen bonds: A:R.75, A:R.75

1 x 7F9: ~{N}-[2-(ethylamino)-2-oxidanylidene-ethyl]-~{N}-(4-methoxyphenyl)-2,4-bis(oxidanyl)benzamide(Non-covalent)

7F9.2: 12 residues within 4Å: Chain A: L.253, N.256, A.257, R.259, A.260, D.291, G.293, G.295, V.296, L.304, L.347, T.355 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:N.256, A:L.304 Hydrogen bonds: A:N.256, A:R.259, A:D.291, A:G.293, A:G.295, A:T.355 Water bridges: A:G.293 pi-Cation interactions: A:R.259

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 1 residues within 4Å: Chain A: L.347 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brough, P.A. et al., Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase. J. Med. Chem. (2017)

Release Date

2017-02-22

Peptides

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial

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