SMTL ID : 5m4p.1

Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

1 x 7FE: ~{N}-[4-(2-chloranyl-5-methyl-pyrimidin-4-yl)phenyl]-2,4-bis(oxidanyl)-~{N}-[[4-(pyrrolidin-1-ylmethyl)phenyl]methyl]benzamide(Non-covalent)

7FE.1: 13 residues within 4Å: Chain A: L.253, K.255, N.256, R.259, A.260, E.263, D.291, G.293, G.295, V.296, L.304, L.347, T.355 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:A.260, A:L.304, A:T.355 Hydrogen bonds: A:K.255, A:N.256, A:R.259, A:D.291, A:G.295, A:T.355 Water bridges: A:L.253, A:A.257, A:T.355, A:T.355

1 x TF3: N-(2-AMINOETHYL)-2-{3-CHLORO-4-[(4-ISOPROPYLBENZYL)OXY]PHENYL} ACETAMIDE(Non-covalent)

TF3.2: 11 residues within 4Å: Chain A: L.72, P.73, R.75, V.76, V.82, M.131, Y.138, N.151, I.152, F.155, L.156 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.76, A:V.76, A:V.82, A:Y.138, A:Y.138, A:N.151, A:I.152, A:F.155, A:L.156 Hydrogen bonds: A:R.75, A:R.75

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: R.371 Ligand excluded by PLIP CL.4: 1 residues within 4Å: Chain A: L.347 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brough, P.A. et al., Application of Off-Rate Screening in the Identification of Novel Pan-Isoform Inhibitors of Pyruvate Dehydrogenase Kinase. J. Med. Chem. (2017)

Release Date

2017-02-22

Peptides

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[Pyruvate dehydrogenase (acetyl-transferring)] kinase isozyme 2, mitochondrial

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