SMTL ID : 5m5i.1

Pseudo-atomic model of microtubule-bound S.pombe kinesin-5 motor domain in the AMPPNP state (based on cryo-electron microscopy experiment): the N-terminus conformation allows formation of a cover neck bundle.

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-mer

Ligands

2 x MG: MAGNESIUM ION

MG.1: 1 residues within 4Å: Ligands: GTP.2 Protein-ligand interaction information (PLIP) not available MG.5: 2 residues within 4Å: Chain C: S.219 Ligands: ANP.6 Protein-ligand interaction information (PLIP) not available

1 x GTP: GUANOSINE-5'-TRIPHOSPHATE

GTP.2: 1 residues within 4Å: Ligands: MG.1 Protein-ligand interaction information (PLIP) not available

1 x GDP: GUANOSINE-5'-DIPHOSPHATE

GDP.3: 8 residues within 4Å: Chain B: Q.11, C.12, Q.15, I.16, G.141, G.142, T.143, G.144 Protein-ligand interaction information (PLIP) not available

1 x TA1: TAXOL

TA1.4: 8 residues within 4Å: Chain B: V.23, D.224, L.228, A.231, L.273, T.274, R.276, G.360 Protein-ligand interaction information (PLIP) not available

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER

ANP.6: 7 residues within 4Å: Chain C: T.98, G.99, G.101, S.219, A.266, G.267 Ligands: MG.5 Protein-ligand interaction information (PLIP) not available

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Britto, M. et al., Schizosaccharomyces pombe kinesin-5 switches direction using a steric blocking mechanism. Proc. Natl. Acad. Sci. U.S.A. (2016)

Release Date

2016-11-30

Peptides

Tubulin alpha-1D chain: A
Tubulin beta-2B chain: B
Kinesin-like protein cut7: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

Tubulin alpha-1D chain

Tubulin beta-2B chain

Kinesin-like protein cut7

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