SMTL ID : 5m8m.1 (3 other biounits)

Crystal structure of human tyrosinase related protein 1 in complex with kojic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 7 residues within 4Å: Chain A: L.12, R.13, S.14, G.15, R.69, F.70, N.72 No protein-ligand interaction detected (PLIP)

1 x NAG- FUC: alpha-L-fucopyranose-(1-6)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-FUC.2: 2 residues within 4Å: Chain A: R.4, N.157 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.157

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.3: 7 residues within 4Å: Chain A: R.140, E.156, S.268, D.271, Y.272, L.275, N.280 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.271 NAG-NAG.4: 1 residues within 4Å: Chain A: N.326 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 7 residues within 4Å: Chain A: G.293, N.294, V.295, A.296, N.361, G.362, Q.366 No protein-ligand interaction detected (PLIP)

3 x ZN: ZINC ION(Non-covalent)

ZN.6: 6 residues within 4Å: Chain A: H.168, H.191, H.200, H.380 Ligands: ZN.7, KOJ.8 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.168, A:H.191, A:H.200, H2O.1 ZN.7: 6 residues within 4Å: Chain A: H.353, H.357, F.376, H.380 Ligands: ZN.6, KOJ.8 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.353, A:H.357, A:H.380, H2O.1 ZN.9: 2 residues within 4Å: Chain A: E.42, H.76 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:E.42, A:E.42

1 x KOJ: 5-HYDROXY-2-(HYDROXYMETHYL)-4H-PYRAN-4-ONE(Non-covalent)

KOJ.8: 13 residues within 4Å: Chain A: H.168, H.191, H.353, N.354, H.357, L.358, G.364, G.365, Q.366, T.367, S.370 Ligands: ZN.6, ZN.7 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.370, A:S.370 pi-Stacking: A:H.357

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lai, X. et al., Structure of Human Tyrosinase Related Protein 1 Reveals a Binuclear Zinc Active Site Important for Melanogenesis. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-07-12

Peptides

5,6-dihydroxyindole-2-carboxylic acid oxidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

5,6-dihydroxyindole-2-carboxylic acid oxidase

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