5mjl.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 5mjl.1

Single-shot pink beam serial crystallography: Proteinase K

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: P.175, V.177, C.178, D.200

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:P.175, A:D.200, A:D.200, H₂O.4, H₂O.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:

5 residues within 4Å:

Chain A: I.108, S.140, S.143, A.144, R.147

Ligand excluded by PLIP

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.3:

10 residues within 4Å:

Chain A: L.96, G.100, S.101, G.102, Q.103, Y.104, I.107, L.133, G.134, G.135

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:L.96, A:Y.104, A:I.107
Hydrogen bonds: A:G.102, A:Q.103, A:Y.104
Water bridges: A:S.105

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4:

7 residues within 4Å:

Chain A: N.5, A.6, P.7, W.8, S.21, R.185, L.209

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:W.8
Water bridges: A:N.5, A:S.21, A:R.185
Salt bridges: A:R.185

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Meents, A. et al., Pink-beam serial crystallography. Nat Commun (2017)

Release Date

2017-11-15

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

Related Entries With Identical Sequence

1ic6.1 | 1p7v.1 | 1p7w.1 | 2dqk.1 | 2duj.1 | 2g4v.1 | 2hd4.1 | 2hpz.1 | 2id8.1 | 2pq2.1 | 2pwa.1 | 2pwb.1 | 2pyz.1 | 2v8b.1 | 3aj8.1 | 3aj9.1 | 3dyb.1 | 3gt3.1 | 3gt4.1 | 3l1k.1 | 3osz.1 | 3q40.1 | 3q5g.1 | 3qmp.1 | 4b5l.1 | 4fon.1 | 4wob.1 | 4woc.1 | 4zar.1 | 5avj.1 more...less...

5avk.1 | 5b1d.1 | 5b1e.1 | 5cw1.1 | 5i9s.1 | 5kxu.1 | 5kxv.1 | 5roc.1 | 5rod.1 | 5roe.1 | 5rof.1 | 5rog.1 | 5roh.1 | 5roi.1 | 5roj.1 | 5rok.1 | 5rol.1 | 5rom.1 | 5ron.1 | 5roo.1 | 5rop.1 | 5roq.1 | 5ror.1 | 5ros.1 | 5rot.1 | 5rou.1 | 5rov.1 | 5row.1 | 5rox.1 | 5roy.1 | 5roz.1 | 5rp0.1 | 5rp1.1 | 5rp2.1 | 5rp3.1 | 5rp4.1 | 5rp5.1 | 5rp6.1 | 5rp7.1 | 5rp8.1 | 5rp9.1 | 5rpa.1 | 5rpb.1 | 5rpc.1 | 5rpd.1 | 5rpe.1 | 5rpf.1 | 5rpg.1 | 5rph.1 | 5rpi.1 | 5rpj.1 | 5rpk.1 | 5rpl.1 | 5rpm.1 | 5rpn.1 | 5rpo.1 | 5rpp.1 | 5rpq.1 | 5rpr.1 | 5rps.1 | 5rpt.1 | 5rpu.1 | 5rpv.1 | 5rpw.1 | 5rpx.1 | 5rpy.1 | 5rpz.1 | 5uvl.1 | 5whw.1 | 5wjg.1 | 5wjh.1 | 5wrc.1 | 6fjs.1 | 6j43.1 | 6k2p.1 | 6k2r.1 | 6k2s.1 | 6k2t.1 | 6k2v.1 | 6k2w.1 | 6k2x.1 | 6law.1 | 6mh6.1 | 6n4u.1 | 6qf1.1 | 6qxv.1 | 6rug.1 | 6ruh.1 | 6ruk.1 | 6run.1 | 6ruw.1 | 6rve.1 | 6rvg.1 | 6rzp.1 | 6txg.1 | 6v8r.1 | 6zet.1 | 6zeu.1 | 6zev.1 | 7a68.1 | 7a9f.1 | 7a9k.1 | 7a9m.1 | 7c0p.1 | 7ln7.1 | 7lpt.1 | 7lpu.1 | 7lpv.1 | 7lq8.1 | 7lq9.1 | 7lqa.1 | 7lqb.1 | 7lqc.1 | 7ltd.1 | 7lti.1 | 7ltv.1 | 7lu0.1 | 7lu1.1 | 7lu2.1 | 7lu3.1 | 7njj.1 | 7nuy.1 | 7nuz.1 | 7s4z.1 | 8e53.1 | 8f05.1 | 8f06.1 | 8f07.1 | 8fyo.1 | 8fyp.1 | 8fyq.1 | 8fyr.1 | 8fys.1 | 8sog.1 | 8sou.1 | 8sov.1 | 8spl.1 | 8sqv.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top