6rzp.1 | SWISS-MODEL Template Library

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SMTL ID : 6rzp.1

Multicrystal structure of Proteinase K at room temperature using a multilayer monochromator.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

3 residues within 4Å:

Chain A: S.262, N.263, I.264

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:N.263
Water bridges: A:L.261

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	3 residues within 4Å: Chain A: P.7, W.8, R.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.8 Water bridges: A:A.6 Salt bridges: A:R.185
SO4.3:	3 residues within 4Å: Chain A: S.138, S.139, S.140 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.138, A:S.138, A:S.139, A:S.140, A:S.140 Water bridges: A:S.139

1 x CA: CALCIUM ION(Non-covalent)

CA.4:

7 residues within 4Å:

Chain A: A.172, E.174, P.175, V.177, T.179, V.198, D.200

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:E.174, A:V.177, A:T.179, A:D.200

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5:

2 residues within 4Å:

Chain A: K.57, T.58

Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6:

4 residues within 4Å:

Chain A: N.161, G.222, T.223, S.224

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:N.161, A:N.161, A:T.223, A:S.224
Water bridges: A:S.224, A:S.224

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Mikolajek, H. et al., Protein-to-structure pipeline for ambient-temperature crystallography at VMXi. Iucrj (2023)

Release Date

2019-07-17

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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