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SMTL ID : 5mjl.1

Single-shot pink beam serial crystallography: Proteinase K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.21 Å

Oligo State

monomer

Ligands

1 x CA: CALCIUM ION(Non-covalent)

CA.1:

4 residues within 4Å:

Chain A: P.175, V.177, C.178, D.200

5 PLIP interactions:

3 interactions with chain A, 2 Ligand-Water interactions

Metal complexes: A:P.175, A:D.200, A:D.200, H₂O.4, H₂O.7

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.2:

5 residues within 4Å:

Chain A: I.108, S.140, S.143, A.144, R.147

Ligand excluded by PLIP

1 x NHE: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID(Non-covalent)

NHE.3:

10 residues within 4Å:

Chain A: L.96, G.100, S.101, G.102, Q.103, Y.104, I.107, L.133, G.134, G.135

7 PLIP interactions:

7 interactions with chain A

Hydrophobic interactions: A:L.96, A:Y.104, A:I.107
Hydrogen bonds: A:G.102, A:Q.103, A:Y.104
Water bridges: A:S.105

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4:

7 residues within 4Å:

Chain A: N.5, A.6, P.7, W.8, S.21, R.185, L.209

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:W.8
Water bridges: A:N.5, A:S.21, A:R.185
Salt bridges: A:R.185

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Meents, A. et al., Pink-beam serial crystallography. Nat Commun (2017)

Release Date

2017-11-15

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

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