SMTL ID : 5ml5.1

Human p38alpha MAPK in complex with imidazolyl pyridine inhibitor 11b

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

3 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 15 residues within 4Å: Chain A: P.191, E.192, L.195, W.197, M.198, H.199, Y.200, L.232, L.236, L.246, K.249, L.291, D.292, S.293, D.294 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:P.191, A:L.195, A:W.197, A:W.197, A:L.232, A:L.236 Hydrogen bonds: A:H.199, A:K.249, A:D.292, A:S.293 Water bridges: A:N.201, A:S.293 BOG.2: 9 residues within 4Å: Chain A: N.196, W.197, K.249, I.250, S.251, A.255, Y.258, I.259, L.262 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.255, A:Y.258, A:I.259, A:L.262 Hydrogen bonds: A:L.195, A:W.197, A:K.249, A:S.251 Water bridges: A:S.252 BOG.3: 10 residues within 4Å: Chain A: R.70, L.74, V.83, I.84, I.146, I.147, H.148, R.149, D.168, E.328 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.83, A:I.84, A:I.146, A:D.168 Hydrogen bonds: A:R.149, A:E.328 Water bridges: A:R.149 Salt bridges: A:R.70

1 x 1VI: 3-(2,5-dimethoxyphenyl)-~{N}-[4-[4-(4-fluorophenyl)-2-methylsulfanyl-1~{H}-imidazol-5-yl]pyridin-2-yl]propanamide(Non-covalent)

1VI.4: 14 residues within 4Å: Chain A: V.30, Y.35, V.38, A.51, K.53, L.86, L.104, V.105, T.106, H.107, L.108, M.109, G.110, F.169 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.30, A:K.53, A:T.106, A:F.169, A:F.169 Hydrogen bonds: A:K.53, A:M.109, A:M.109 Water bridges: A:G.170 pi-Stacking: A:F.169

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Halekotte, J. et al., Optimized 4,5-Diarylimidazoles as Potent/Selective Inhibitors of Protein Kinase CK1 delta and Their Structural Relation to p38 alpha MAPK. Molecules (2017)

Release Date

2017-04-05

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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