SMTL ID : 5mmo.1

E. coli DNA Gyrase B 24 kDa ATPase domain in complex with [3-(3-ethyl-ureido)-5-(pyridin-4-yl)-isoquinolin-8-yl-methyl]-carbamic acid prop-2-ynyl ester

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.81 Å

Oligo State

monomer

Ligands

1 x 9JG: prop-2-ynyl ~{N}-[[3-(ethylcarbamoylamino)-5-pyridin-4-yl-isoquinolin-8-yl]methyl]carbamate(Non-covalent)

9JG.1: 15 residues within 4Å: Chain A: V.57, N.60, A.61, E.64, V.85, D.87, R.90, G.91, I.92, P.93, I.108, R.150, T.179, V.181 Ligands: PO4.2 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:N.60, A:V.85, A:I.92, A:I.92, A:I.108, A:T.179 Hydrogen bonds: A:D.87, A:D.87, A:R.150, A:R.150 Water bridges: A:N.60, A:G.91, A:T.179

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: P.93, T.94, G.95, R.150, E.151 Ligands: 9JG.1 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:T.94, A:G.95, A:E.151 Salt bridges: A:R.150

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Panchaud, P. et al., Discovery and Optimization of Isoquinoline Ethyl Ureas as Antibacterial Agents. J. Med. Chem. (2017)

Release Date

2017-04-26

Peptides

DNA gyrase subunit B: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA gyrase subunit B

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