SMTL ID : 5moz.1 (2 other biounits)

OXA-10 Avibactam complex with bound Iodide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.34 Å

Oligo State

monomer

Ligands

1 x NXL: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide(Covalent)

NXL.1: 10 residues within 4Å: Chain A: A.48, S.49, M.81, S.97, V.99, K.187, T.188, G.189, F.190, R.232 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:S.49, A:S.97, A:S.97, A:T.188, A:F.190 Water bridges: A:K.187, A:R.232, A:R.232 Salt bridges: A:K.187, A:R.232

5 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: A.179, P.180, E.181, Y.182, E.209, E.211 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:P.180, A:Y.182, A:E.209, A:E.211 GOL.3: 7 residues within 4Å: Chain A: K.120, F.121, S.122, E.150, F.151, S.154, L.160 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.120, A:E.150, A:S.154 GOL.4: 5 residues within 4Å: Chain A: E.61, T.62, R.113, K.116, Y.117 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.113, A:K.116, A:Y.117 GOL.5: 4 residues within 4Å: Chain A: Q.70, F.72, K.73, E.108 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.70, A:K.73, A:E.108 GOL.6: 5 residues within 4Å: Chain A: Y.182, W.204, M.240, I.245, I.246 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.182, A:I.245 Water bridges: A:E.177, A:S.186, A:S.186

5 x NA: SODIUM ION(Non-functional Binders)

NA.7: 2 residues within 4Å: Chain A: Y.45, L.46 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:L.46, A:R.142 NA.8: 4 residues within 4Å: Chain A: C.26, K.27, K.31, S.32 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.27, A:S.32 NA.9: 2 residues within 4Å: Chain A: D.222, D.224 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.224, A:D.224 Water bridges: A:D.222 NA.10: 2 residues within 4Å: Chain A: A.179, E.181 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.181 Water bridges: A:E.181, A:E.181 NA.11: 2 residues within 4Å: Chain A: E.13, S.242 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.13, A:S.242, A:S.242

4 x IOD: IODIDE ION(Non-functional Binders)

IOD.12: 2 residues within 4Å: Chain A: K.52, W.136 Ligand excluded by PLIP IOD.13: 2 residues within 4Å: Chain A: A.80, P.100 Ligand excluded by PLIP IOD.14: 2 residues within 4Å: Chain A: P.230, R.232 Ligand excluded by PLIP IOD.15: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lohans, C.T. et al., (13)C-Carbamylation as a mechanistic probe for the inhibition of class D beta-lactamases by avibactam and halide ions. Org. Biomol. Chem. (2017)

Release Date

2017-07-12

Peptides

Beta-lactamase OXA-10: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Beta-lactamase OXA-10

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