- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.34 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NXL: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide(Covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.2: 9 residues within 4Å:- Chain A: A.179, P.180, E.181, Y.182, E.209, E.211
- Chain B: T.89, R.91, G.92
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:Y.182, A:E.209, A:E.211, B:R.91, B:R.91
- Water bridges: B:L.90, B:G.92
GOL.3: 7 residues within 4Å:- Chain A: K.120, F.121, S.122, E.150, F.151, S.154, L.160
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:K.120, A:E.150, A:S.154
GOL.4: 5 residues within 4Å:- Chain A: E.61, T.62, R.113, K.116, Y.117
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.113, A:K.116, A:Y.117
GOL.5: 4 residues within 4Å:- Chain A: Q.70, F.72, K.73, E.108
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.70, A:K.73, A:E.108
GOL.6: 5 residues within 4Å:- Chain A: Y.182, W.204, M.240, I.245, I.246
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:Y.182, A:I.245
- Water bridges: A:E.177, A:S.186, A:S.186
GOL.16: 9 residues within 4Å:- Chain A: T.89, R.91, G.92
- Chain B: A.179, P.180, E.181, Y.182, E.209, E.211
9 PLIP interactions:4 interactions with chain B, 5 interactions with chain A- Hydrogen bonds: B:Y.182, B:E.209, B:E.211, A:T.89, A:R.91, A:R.91
- Water bridges: B:K.210, A:L.90, A:G.92
- 6 x NA: SODIUM ION(Non-functional Binders)
NA.7: 2 residues within 4Å:- Chain A: Y.45, L.46
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:L.46, A:R.142
NA.8: 4 residues within 4Å:- Chain A: C.26, K.27, K.31, S.32
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:K.27, A:S.32
NA.9: 2 residues within 4Å:- Chain A: D.222, D.224
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.222, A:D.224
- Water bridges: A:D.222
NA.10: 2 residues within 4Å:- Chain A: A.179, E.181
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.181
- Water bridges: A:E.181, A:E.181
NA.11: 2 residues within 4Å:- Chain A: E.13, S.242
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.13, A:E.13, A:S.242
NA.17: 3 residues within 4Å:- Chain B: E.150, F.151, S.154
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.154, B:S.154
- 8 x IOD: IODIDE ION(Non-functional Binders)
IOD.12: 2 residues within 4Å:- Chain A: K.52, W.136
Ligand excluded by PLIPIOD.13: 2 residues within 4Å:- Chain A: A.80, P.100
Ligand excluded by PLIPIOD.14: 2 residues within 4Å:- Chain A: P.230, R.232
Ligand excluded by PLIPIOD.15: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPIOD.19: 2 residues within 4Å:- Chain B: P.230, R.232
Ligand excluded by PLIPIOD.20: 4 residues within 4Å:- Chain B: A.48, S.49, W.136
- Ligands: NXL.23
Ligand excluded by PLIPIOD.21: 3 residues within 4Å:- Chain B: R.79, A.80, P.100
Ligand excluded by PLIPIOD.22: 5 residues within 4Å:- Chain B: M.1, G.2, C.26, K.27, K.31
Ligand excluded by PLIP- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lohans, C.T. et al., (13)C-Carbamylation as a mechanistic probe for the inhibition of class D beta-lactamases by avibactam and halide ions. Org. Biomol. Chem. (2017)
- Release Date
- 2017-07-12
- Peptides
- Beta-lactamase OXA-10: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.34 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x NXL: (2S,5R)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide(Covalent)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 6 x NA: SODIUM ION(Non-functional Binders)
- 8 x IOD: IODIDE ION(Non-functional Binders)
- 1 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lohans, C.T. et al., (13)C-Carbamylation as a mechanistic probe for the inhibition of class D beta-lactamases by avibactam and halide ions. Org. Biomol. Chem. (2017)
- Release Date
- 2017-07-12
- Peptides
- Beta-lactamase OXA-10: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B