SMTL ID : 5mrr.4 (3 other biounits)

Crystal structure of L1 protease of Lysobacter sp. XL1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.111, C.138, R.178 7 PLIP interactions: 7 interactions with chain A Water bridges: A:C.138, A:R.178, A:R.178, A:R.178, A:R.178 Salt bridges: A:R.111, A:R.178

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 4 residues within 4Å: Chain A: Y.82, G.109, Y.110 Ligands: NA.4 Ligand excluded by PLIP CL.3: 3 residues within 4Å: Chain A: G.39, V.40, R.57 Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 4 residues within 4Å: Chain A: N.81, Y.82, S.83 Ligands: CL.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.82

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 6 residues within 4Å: Chain A: H.36, F.59, Y.124, E.126, S.160, G.161 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.126, A:S.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabdulkhakov, A. et al., Crystal structure of L1 protease of Lysobacter sp. XL1. To Be Published

Release Date

2018-01-17

Peptides

Lytic endopeptidase preproenzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

Lytic endopeptidase preproenzyme

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