SMTL ID : 5mrs.3 (3 other biounits)

Crystal structure of L1 protease Lysobacter sp. XL1 in complex with AEBSF

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.45, Q.50 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.50, A:Q.50 Salt bridges: A:R.45

1 x AES: 4-(2-AMINOETHYL)BENZENESULFONYL FLUORIDE(Non-covalent)

AES.2: 12 residues within 4Å: Chain A: Y.124, M.139, G.140, R.141, G.142, D.143, S.144, M.159, S.160, G.161, G.162, V.164 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:R.141, A:V.164, A:V.164 Water bridges: A:E.126

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 1 residues within 4Å: Chain A: A.100 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 2 residues within 4Å: Chain A: R.184, P.187 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.184

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.5: 5 residues within 4Å: Chain A: G.39, V.40, R.57, V.58, F.59 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.40, A:R.57, A:F.59, A:F.59

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gabdulkhakov, A. et al., Crystal structure of L1 protease Lysobacter sp. XL1 in complex with AEBSF. To Be Published

Release Date

2018-01-17

Peptides

Lytic endopeptidase preproenzyme: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Lytic endopeptidase preproenzyme

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