SMTL ID : 5mth.1 (1 other biounit)

Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-mer

Ligands

3 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 7 residues within 4Å: Chain A: V.2, Q.3, Y.109, W.110, G.111, Q.112 Chain B: S.49 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.3 Water bridges: A:V.2, A:Q.1 GLC-GLC.2: 6 residues within 4Å: Chain A: R.40, Q.43, G.44, L.45, E.46 Chain B: G.105 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain B Salt bridges: A:K.63 Water bridges: B:M.4 GLC-GLC.3: 10 residues within 4Å: Chain A: V.170, H.171, T.172 Chain B: K.45, P.46, L.89, D.170, Q.171, D.172, S.173 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:S.173, B:S.173 Water bridges: B:Q.48

2 x ACT: ACETATE ION(Non-functional Binders)

ACT.4: 2 residues within 4Å: Chain A: G.42, Q.43 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:G.42 ACT.5: 6 residues within 4Å: Chain A: E.50, Y.59, Y.101 Chain B: Y.99, L.100, R.101 5 PLIP interactions: 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: B:L.100, A:E.50 Salt bridges: B:R.101 Hydrophobic interactions: A:Y.59, A:Y.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skrabana, R., Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21. To be published

Release Date

2018-05-02

Peptides

antibody Fab heavy chain: A
antibody Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

antibody Fab heavy chain

antibody Fab light chain

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