SMTL ID : 5mth.2 (1 other biounit)

Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.73 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-1)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 11 residues within 4Å: Chain A: V.170, H.171, T.172 Chain B: K.45, P.46, L.89, T.169, D.170, Q.171, D.172, S.173 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain A Hydrogen bonds: B:T.169, A:H.171, A:T.172, A:T.172 Water bridges: B:D.170, B:S.179, A:T.172, A:T.172

3 x ACT: ACETATE ION(Non-functional Binders)

ACT.2: 4 residues within 4Å: Chain A: P.126, S.127, T.211, V.213 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.211 Hydrogen bonds: A:P.126 Water bridges: A:V.128 ACT.3: 5 residues within 4Å: Chain A: S.119, A.121, F.153, L.177, D.180 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.121, A:F.153, A:D.180 Hydrogen bonds: A:S.119, A:S.119 ACT.4: 6 residues within 4Å: Chain A: E.50, Y.59, Y.101 Chain B: Y.99, L.100, R.101 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.59, A:Y.101 Hydrogen bonds: A:Y.101, B:L.100 Salt bridges: B:R.101

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skrabana, R., Structure of DC8E8 Fab at pH 6.5 crystallized in spacegroup P21. To be published

Release Date

2018-05-02

Peptides

antibody Fab heavy chain: A
antibody Fab light chain: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

antibody Fab heavy chain

antibody Fab light chain

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