SMTL ID : 5mtv.1

Active structure of EHD4 complexed with ATP-gamma-S

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.79 Å

Oligo State

homo-dimer

Ligands

2 x AGS: PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER(Non-covalent)

AGS.1: 22 residues within 4Å: Chain A: Q.51, Y.52, S.53, T.54, G.55, K.56, T.57, T.58, R.72, I.73, G.74, P.75, D.80, D.138, G.141, N.204, K.205, Q.208, S.241, F.242, W.243 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:S.53, A:T.54, A:G.55, A:K.56, A:K.56, A:T.57, A:T.57, A:T.58, A:T.58, A:G.74, A:D.80, A:G.141, A:K.205, A:S.241, A:S.241, A:F.242 Salt bridges: A:K.56 pi-Stacking: A:W.243, A:W.243 AGS.3: 22 residues within 4Å: Chain B: Q.51, Y.52, S.53, T.54, G.55, K.56, T.57, T.58, R.72, I.73, G.74, P.75, D.80, D.138, G.141, N.204, K.205, Q.208, S.241, F.242, W.243 Ligands: MG.4 19 PLIP interactions: 19 interactions with chain B Hydrogen bonds: B:S.53, B:T.54, B:G.55, B:K.56, B:K.56, B:T.57, B:T.57, B:T.58, B:T.58, B:G.74, B:D.80, B:G.141, B:K.205, B:S.241, B:S.241, B:F.242 Salt bridges: B:K.56 pi-Stacking: B:W.243, B:W.243

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.56, T.57, D.138 Ligands: AGS.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.57, A:D.138 MG.4: 4 residues within 4Å: Chain B: K.56, T.57, D.138 Ligands: AGS.3 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.57, B:D.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Melo, A.A. et al., Structural insights into the activation mechanism of dynamin-like EHD ATPases. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-03-08

Peptides

EH domain-containing protein 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

EH domain-containing protein 4

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