SMTL ID : 5mvf.1

Active structure of EHD4 complexed with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.27 Å

Oligo State

homo-dimer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 16 residues within 4Å: Chain A: Q.51, Y.52, S.53, T.54, G.55, K.56, T.57, T.58, I.73, N.204, K.205, Q.208, S.241, F.242, W.243 Ligands: MG.2 13 PLIP interactions: 13 interactions with chain A Hydrogen bonds: A:Q.51, A:S.53, A:T.54, A:G.55, A:K.56, A:T.57, A:T.57, A:T.58, A:K.205, A:S.241, A:F.242 pi-Stacking: A:W.243, A:W.243 ADP.3: 16 residues within 4Å: Chain B: Q.51, Y.52, S.53, T.54, G.55, K.56, T.57, T.58, I.73, N.204, K.205, Q.208, S.241, F.242, W.243 Ligands: MG.4 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Q.51, B:S.53, B:T.54, B:G.55, B:K.56, B:T.57, B:T.57, B:T.58, B:K.205, B:S.241, B:F.242 pi-Stacking: B:W.243, B:W.243

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: K.56, T.57, D.138 Ligands: ADP.1 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:T.57, A:D.138 MG.4: 4 residues within 4Å: Chain B: K.56, T.57, D.138 Ligands: ADP.3 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:T.57, B:D.138

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Melo, A.A. et al., Structural insights into the activation mechanism of dynamin-like EHD ATPases. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-03-08

Peptides

EH domain-containing protein 4: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

EH domain-containing protein 4

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