SMTL ID : 5mty.1

Dibenzosuberone inhibitor 8e in complex with p38 MAPK

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.31 Å

Oligo State

monomer

Ligands

1 x HB9: ~{N}-[2,4-bis(fluoranyl)-5-[[14-(2-hydroxyethylcarbamoyl)-2-oxidanylidene-6-tricyclo[9.4.0.0^{3,8}]pentadeca-1(15),3(8),4,6,11,13-hexaenyl]amino]phenyl]thiophene-2-carboxamide(Non-covalent)

HB9.1: 15 residues within 4Å: Chain A: V.38, A.51, K.53, E.71, L.75, I.84, L.104, T.106, L.108, M.109, G.110, A.111, L.167, D.168, F.169 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:A.51, A:K.53, A:E.71, A:L.108, A:L.167, A:L.167 Hydrogen bonds: A:K.53, A:E.71, A:M.109, A:G.110, A:D.168 pi-Stacking: A:F.169

2 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.2: 12 residues within 4Å: Chain A: E.192, L.195, W.197, H.199, Y.200, L.236, L.246, K.249, L.291, D.292, S.293, D.294 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.195, A:W.197, A:W.197, A:L.236, A:L.246, A:L.246 Hydrogen bonds: A:H.199, A:K.249, A:D.292, A:S.293, A:S.293 Water bridges: A:N.201 BOG.3: 7 residues within 4Å: Chain A: L.195, N.196, W.197, H.199, K.249, I.250, S.251 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.250 Hydrogen bonds: A:L.195, A:K.249, A:S.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Walter, N.M. et al., Design, Synthesis, and Biological Evaluation of Novel Type I(1)/2 p38 alpha MAP Kinase Inhibitors with Excellent Selectivity, High Potency, and Prolonged Target Residence Time by Interfering with the R-Spine. J. Med. Chem. (2017)

Release Date

2017-09-06

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

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