SMTL ID : 5mu8.1 (23 other biounits)

HUMAN TNF-ALPHA IN COMPLEX WITH JNJ525

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x JNI: ~{N}4-(phenylmethyl)-~{N}4-[2-[3-(2-piperazin-1-ylpyrimidin-5-yl)phenyl]phenyl]pyrimidine-2,4-diamine(Non-covalent)

JNI.1: 15 residues within 4Å: Chain A: L.59, Y.61, S.62, Y.121, L.122, G.123, G.124, Y.153, I.157 Chain B: L.59, I.60, Y.121, G.123, G.124 Ligands: JNI.2 8 PLIP interactions: 6 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:L.59, A:Y.61, A:I.157, B:L.59, B:L.59 Hydrogen bonds: A:S.62, A:L.122 pi-Stacking: A:Y.61 JNI.2: 3 residues within 4Å: Chain A: H.17, Y.153 Ligands: JNI.1 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:H.17 Hydrogen bonds: A:Y.153 pi-Cation interactions: A:H.17

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blevitt, J.M. et al., Structural Basis of Small-Molecule Aggregate Induced Inhibition of a Protein-Protein Interaction. J. Med. Chem. (2017)

Release Date

2017-03-29

Peptides

Tumor necrosis factor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Tumor necrosis factor

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