SMTL ID : 5mu8.20 (23 other biounits)

HUMAN TNF-ALPHA IN COMPLEX WITH JNJ525

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

3 x JNI: ~{N}4-(phenylmethyl)-~{N}4-[2-[3-(2-piperazin-1-ylpyrimidin-5-yl)phenyl]phenyl]pyrimidine-2,4-diamine(Non-covalent)

JNI.1: 5 residues within 4Å: Chain A: V.15, H.17, I.157 Ligands: JNI.2, JNI.3 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.15, A:I.157, A:I.157 JNI.2: 5 residues within 4Å: Chain A: Y.121 Chain B: Y.121, G.123 Ligands: JNI.1, JNI.3 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Hydrophobic interactions: A:Y.121, A:Y.121, A:Y.121, B:Y.121, B:Y.121 JNI.3: 12 residues within 4Å: Chain A: L.59, Y.61, L.122, G.123, G.124, Y.153 Chain B: K.13, L.59, A.158, L.159 Ligands: JNI.1, JNI.2 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:L.59, B:L.159, A:L.59, A:Y.61 Hydrogen bonds: B:K.13 pi-Stacking: A:Y.61

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Blevitt, J.M. et al., Structural Basis of Small-Molecule Aggregate Induced Inhibition of a Protein-Protein Interaction. J. Med. Chem. (2017)

Release Date

2017-03-29

Peptides

Tumor necrosis factor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
n

B
o

Tumor necrosis factor

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