SMTL ID : 5mwo.1

Structure of Mycobacterium Tuberculosis Transcriptional Regulatory Repressor Protein (EthR) in complex with fragment 7E8.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.96 Å

Oligo State

homo-dimer

Ligands

4 x J6W: (5-methyl-1-benzothiophen-2-yl)methanol(Non-covalent)

J6W.1: 10 residues within 4Å: Chain A: M.106, W.107, G.110, I.111, F.114, Y.152, T.153, N.183, W.211 Ligands: J6W.2 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:W.107, A:F.114, A:W.211, A:W.211 J6W.2: 11 residues within 4Å: Chain A: F.114, F.118, T.125, W.142, M.146, W.149, N.180, N.183, E.184, L.187 Ligands: J6W.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.114, A:W.149, A:N.183, A:L.187 pi-Stacking: A:F.114 J6W.4: 10 residues within 4Å: Chain B: M.106, W.107, G.110, I.111, F.114, Y.152, T.153, N.183, W.211 Ligands: J6W.5 4 PLIP interactions: 4 interactions with chain B Hydrophobic interactions: B:W.107, B:F.114, B:W.211, B:W.211 J6W.5: 11 residues within 4Å: Chain B: F.114, F.118, T.125, W.142, M.146, W.149, N.180, N.183, E.184, L.187 Ligands: J6W.4 5 PLIP interactions: 5 interactions with chain B Hydrophobic interactions: B:F.114, B:W.149, B:N.183, B:L.187 pi-Stacking: B:F.114

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: D.102, R.103 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.103, A:R.103 EDO.6: 2 residues within 4Å: Chain B: D.102, R.103 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:R.103, B:R.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chan, D.S. et al., Fragment Screening against the EthR-DNA Interaction by Native Mass Spectrometry. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-05-31

Peptides

HTH-type transcriptional regulator EthR: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

HTH-type transcriptional regulator EthR

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