SMTL ID : 5n0a.1

Crystal structure of A259C covalently linked dengue 2 virus envelope glycoprotein dimer in complex with the Fab fragment of the broadly neutralizing human antibody EDE2 A11

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.90 Å

Oligo State

hetero-2-2-2-mer

Ligands

2 x NAG- NAG- BMA- MAN- MAN- FUC: alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-FUC.1: 12 residues within 4Å: Chain A: H.149, N.153, K.157, H.158 Chain D: R.98, F.103, Y.104, Y.105, S.107, D.121 Chain F: R.58, S.60 3 PLIP interactions: 1 interactions with chain F, 1 interactions with chain D, 1 interactions with chain A Hydrogen bonds: F:S.60, D:Y.104, F:R.58, A:K.157 NAG-NAG-BMA-MAN-MAN-FUC.2: 11 residues within 4Å: Chain B: H.149, N.153, K.157, H.158 Chain C: V.2, R.98, F.103, Y.104, S.107 Chain E: R.58, S.60 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain B Hydrogen bonds: E:S.60, E:R.58, B:K.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rouvinski, A. et al., Covalently linked dengue virus envelope glycoprotein dimers reduce exposure of the immunodominant fusion loop epitope. Nat Commun (2017)

Release Date

2017-06-07

Peptides

Envelope Glycoprotein E: AB
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 HEAVY CHAIN: CD
BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11: EF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
I

E
L

F
M

Envelope Glycoprotein E

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11 HEAVY CHAIN

BROADLY NEUTRALIZING HUMAN ANTIBODY EDE2 A11

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