SMTL ID : 5n0c.1 (1 other biounit)

Crystal structure of the tetanus neurotoxin in complex with GM1a

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

monomer

Ligands

1 x BGC- GAL- NGA- GAL- SIA: beta-D-galactopyranose-(1-3)-2-acetamido-2-deoxy-beta-D-galactopyranose-(1-4)-[N-acetyl-alpha-neuraminic acid-(2-3)]beta-D-galactopyranose-(1-4)-beta-D-glucopyranose

BGC-GAL-NGA-GAL-SIA.1: 10 residues within 4Å: Chain A: N.1239, L.1241, D.1242, T.1290, H.1291, I.1305, S.1307, W.1309, Y.1310 Ligands: PEG.3 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.1291, A:N.1239, A:H.1291, A:S.1307 Water bridges: A:W.1309, A:N.1312

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 3 residues within 4Å: Chain A: H.253, H.257, E.291 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.253, A:H.257

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.3: 7 residues within 4Å: Chain A: T.1290, W.1309, Y.1310, D.1316, L.1319, G.1320 Ligands: BGC-GAL-NGA-GAL-SIA.1 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.1290, A:T.1290

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Masuyer, G. et al., The structure of the tetanus toxin reveals pH-mediated domain dynamics. EMBO Rep. (2017)

Release Date

2017-06-21

Peptides

Tetanus toxin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tetanus toxin

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