SMTL ID : 5n2f.1

Structure of PD-L1/small-molecule inhibitor complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-mer

Ligands

1 x 8HW: 4-[[4-[[3-(2,3-dihydro-1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-2,5-bis(fluoranyl)phenyl]methylamino]-3-oxidanylidene-butanoic acid(Non-covalent)

8HW.1: 20 residues within 4Å: Chain A: F.2, T.3, I.37, Y.39, Q.49, M.98, A.104, D.105, Y.106 Chain B: I.37, Y.39, Q.49, V.51, V.59, M.98, I.99, S.100, A.104, D.105, Y.106 9 PLIP interactions: 6 interactions with chain B, 3 interactions with chain A Hydrophobic interactions: B:I.37, B:Y.39, B:M.98, B:A.104, A:M.98, A:A.104 Hydrogen bonds: B:Q.49, A:F.2 pi-Stacking: B:Y.39

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guzik, K. et al., Small-Molecule Inhibitors of the Programmed Cell Death-1/Programmed Death-Ligand 1 (PD-1/PD-L1) Interaction via Transiently Induced Protein States and Dimerization of PD-L1. J. Med. Chem. (2017)

Release Date

2017-06-28

Peptides

Programmed cell death 1 ligand 1: A
Programmed cell death 1 ligand 1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Programmed cell death 1 ligand 1

Programmed cell death 1 ligand 1

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