SMTL ID : 5n3n.1

cAMP-dependent Protein Kinase A from Cricetulus griseus in complex with fragment like molecule [(2R)-2,4-dihydroxy-4-oxobutyl]-trimethylazanium

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.22 Å

Oligo State

monomer

Ligands

2 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)

MPD.1: 11 residues within 4Å: Chain A: V.16, F.19, L.20, F.101, L.153, E.156, Y.157, K.293, W.303, I.304, Y.307 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:V.16, A:F.19, A:L.153, A:Y.307, A:Y.307 MPD.2: 6 residues within 4Å: Chain A: W.31, E.87, L.90, N.91, R.94, E.350 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:E.87, A:L.90, A:R.94 Hydrogen bonds: A:R.94, A:E.350

1 x 152: CARNITINE(Non-covalent)

152.3: 5 residues within 4Å: Chain A: T.66, G.67, N.68, H.69, P.322 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:P.322 Hydrogen bonds: A:H.69 Water bridges: A:H.69 Salt bridges: A:H.69

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.4: 5 residues within 4Å: Chain A: Y.230, Y.236, R.257, F.258, P.259 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Siefker, C. et al., A crystallographic fragment study with cAMP-dependent protein kinase A. To be Published

Release Date

2018-02-28

Peptides

cAMP-dependent protein kinase catalytic subunit alpha: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

cAMP-dependent protein kinase catalytic subunit alpha

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