SMTL ID : 5n5j.1

Human MMP12 in complex with 3-(5-(1,2-dithiolan-3-yl)pentanamido)propane-1-sulfonate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.113, H.117, H.123 Ligands: HAE.6, 8NT.7 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.113, A:H.117, A:H.123, HAE.6 ZN.2: 4 residues within 4Å: Chain A: H.63, D.65, H.78, H.91 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.63, A:D.65, A:H.78, A:H.91

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.53, G.85, I.86, G.87, D.89 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.53, A:G.85, A:G.87, A:D.89, H2O.1, H2O.2 CA.4: 3 residues within 4Å: Chain A: D.19, E.94, E.96 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.19, A:E.94, A:E.94, H2O.3, H2O.4 CA.5: 6 residues within 4Å: Chain A: D.70, G.71, G.73, I.75, D.93, E.96 6 PLIP interactions: 6 interactions with chain A Metal complexes: A:D.70, A:G.71, A:G.73, A:I.75, A:D.93, A:E.96

1 x HAE: ACETOHYDROXAMIC ACID(Non-covalent)

HAE.6: 8 residues within 4Å: Chain A: A.77, H.78, H.113, E.114, H.117, H.123 Ligands: ZN.1, 8NT.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.77

1 x 8NT: 3-[5-[(3~{S})-1,2-dithiolan-3-yl]pentanoylamino]propane-1-sulfonic acid(Non-covalent)

8NT.7: 16 residues within 4Å: Chain A: G.74, I.75, L.76, A.77, L.109, T.110, H.113, E.114, V.130, F.132, P.133, T.134, Y.135, K.136 Ligands: ZN.1, HAE.6 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.109, A:T.110, A:H.113 Hydrogen bonds: A:L.76, A:A.77, A:Y.135

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fragai, M. et al., Lipoyl-Homotaurine Derivative (ADM_12) Reverts Oxaliplatin-Induced Neuropathy and Reduces Cancer Cells Malignancy by Inhibiting Carbonic Anhydrase IX (CAIX). J. Med. Chem. (2017)

Release Date

2017-11-01

Peptides

Macrophage metalloelastase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Macrophage metalloelastase

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