SMTL ID : 5n66.1

Crystal Structure of p38alpha in Complex with Lipid Pocket Ligand 9j

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x BW1: ~{N}4-[[4-(cyclopropylmethyl)furan-2-yl]methyl]-2-phenyl-quinazoline-4,7-diamine(Non-covalent)

BW1.1: 15 residues within 4Å: Chain A: P.191, E.192, L.195, W.197, L.232, L.236, L.246, K.249, S.252, A.255, I.259, L.291, D.292, S.293, D.294 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:P.191, A:L.195, A:L.195, A:W.197, A:L.232, A:L.236, A:L.236, A:L.246, A:K.249, A:A.255, A:I.259 Hydrogen bonds: A:L.291, A:D.294 pi-Stacking: A:W.197, A:W.197

1 x B96: 1-(5-TERT-BUTYL-2-P-TOLYL-2H-PYRAZOL-3-YL)-3-[4-(2-MORPHOLIN-4-YL-ETHOXY)-NAPHTHALEN-1-YL]-UREA(Non-covalent)

B96.2: 20 residues within 4Å: Chain A: V.38, A.51, K.53, R.67, E.71, L.74, L.75, M.78, V.83, I.84, L.104, T.106, H.107, L.108, M.109, H.148, I.166, L.167, D.168, F.169 19 PLIP interactions: 19 interactions with chain A Hydrophobic interactions: A:K.53, A:K.53, A:R.67, A:E.71, A:L.74, A:L.75, A:L.75, A:V.83, A:I.84, A:I.84, A:L.104, A:T.106, A:I.166, A:F.169 Hydrogen bonds: A:E.71, A:E.71, A:E.71, A:M.109, A:D.168

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buhrmann, M. et al., Structure-based design, synthesis and crystallization of 2-arylquinazolines as lipid pocket ligands of p38 alpha MAPK. PLoS ONE (2017)

Release Date

2017-09-20

Peptides

Mitogen-activated protein kinase 14: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mitogen-activated protein kinase 14

Related Entries With Identical Sequence