SMTL ID : 5n89.1 (1 other biounit)

CRYSTAL STRUCTURE OF STREPTAVIDIN WITH PEPTIDE GNSFDDWLASKG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

hetero-4-4-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 10 residues within 4Å: Chain A: N.47, L.49, Y.67, W.103, T.114, W.116, W.132, L.134, D.152 Chain H: F.4 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.47, A:T.114, A:T.114, A:D.152 GOL.2: 10 residues within 4Å: Chain B: N.47, L.49, Y.67, W.103, T.114, W.116, W.132, L.134, D.152 Chain C: F.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:N.47, B:Y.67, B:T.114, B:W.116 GOL.3: 10 residues within 4Å: Chain D: N.47, L.49, Y.67, W.103, T.114, W.116, W.132, L.134, D.152 Chain E: F.4 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:N.47, D:Y.67, D:T.114, D:W.116 GOL.4: 10 residues within 4Å: Chain F: N.47, L.49, Y.67, W.103, T.114, W.116, W.132, L.134, D.152 Chain G: F.4 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:N.47, F:T.114, F:T.114, F:W.116

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyamichev, V.I. et al., Stepwise Evolution Improves Identification of Diverse Peptides Binding to a Protein Target. Sci Rep (2017)

Release Date

2017-10-04

Peptides

Streptavidin: ABDF
GLY-ASN-SER-PHE-ASP-ASP-TRP-LEU-ALA-SER-LYS-GLY-NH2: CEGH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

D
D

F
F

C
C

E
E

G
G

H
I

Streptavidin

GLY-ASN-SER-PHE-ASP-ASP-TRP-LEU-ALA-SER-LYS-GLY-NH2

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