SMTL ID : 5n89.2 (1 other biounit)

CRYSTAL STRUCTURE OF STREPTAVIDIN WITH PEPTIDE GNSFDDWLASKG

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.27 Å

Oligo State

hetero-4-4-mer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 8 residues within 4Å: Chain A: Y.67, W.103, T.114, W.116, W.132, L.134, D.152 Chain B: F.4 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:T.114, A:T.114, A:D.152 Water bridges: A:N.47, A:N.47, A:N.47 GOL.2: 10 residues within 4Å: Chain C: N.47, Y.67, W.103, T.114, W.116, W.132, L.134, D.152 Chain D: F.4 Chain G: W.144 6 PLIP interactions: 6 interactions with chain C Hydrogen bonds: C:N.47, C:Y.67, C:T.114, C:D.152 Water bridges: C:W.132, C:D.152 GOL.3: 9 residues within 4Å: Chain E: N.47, L.49, W.103, T.114, W.116, W.132, L.134, D.152 Chain F: F.4 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:N.47, E:T.114, E:W.116 GOL.4: 10 residues within 4Å: Chain G: N.47, L.49, Y.67, W.103, T.114, W.116, W.132, L.134, D.152 Chain H: F.4 6 PLIP interactions: 6 interactions with chain G Hydrogen bonds: G:N.47, G:Y.67, G:T.114, G:T.114, G:W.116, G:D.152

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lyamichev, V.I. et al., Stepwise Evolution Improves Identification of Diverse Peptides Binding to a Protein Target. Sci Rep (2017)

Release Date

2017-10-04

Peptides

Streptavidin: ACEG
GLY-ASN-SER-PHE-ASP-ASP-TRP-LEU-ALA-SER-LYS-GLY-NH2: BDFH

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

C
K

E
M

G
O

B
J

D
L

F
N

H
P

Streptavidin

GLY-ASN-SER-PHE-ASP-ASP-TRP-LEU-ALA-SER-LYS-GLY-NH2

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