SMTL ID : 5n9x.1 (1 other biounit)

Structure of adenylation domain THR1 involved in the biosynthesis of 4-chlorothreonine in Streptomyces SP.OH-5093, ligand bound structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x THR: THREONINE(Non-covalent)

THR.1: 11 residues within 4Å: Chain A: F.211, D.212, F.213, G.285, G.312, I.313, T.314, V.318, H.319, K.515 Ligands: ATP.2 9 PLIP interactions: 3 Ligand-Ligand interactions, 6 interactions with chain A Hydrogen bonds: T.1, T.1, T.1, A:D.212, A:G.312, A:T.314, A:T.314 Hydrophobic interactions: A:F.213 Salt bridges: A:K.515

1 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)

ATP.2: 19 residues within 4Å: Chain A: T.167, S.168, K.175, G.285, E.286, K.287, N.309, M.310, Y.311, G.312, I.313, T.314, E.315, D.406, Y.418, R.421, K.515 Ligands: THR.1, MG.3 20 PLIP interactions: 19 interactions with chain A, 1 Ligand-Ligand interactions Hydrogen bonds: A:T.167, A:G.285, A:N.309, A:M.310, A:G.312, A:T.314, A:T.314, A:T.314, A:E.315, A:D.406, A:R.421, A:K.515, T.1 Water bridges: A:S.168, A:S.168, A:E.286, A:L.288 Salt bridges: A:K.175, A:K.515, A:K.515

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 2 residues within 4Å: Chain A: R.421 Ligands: ATP.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scaglione, A. et al., Structure of the adenylation domain Thr1 involved in the biosynthesis of 4-chlorothreonine in Streptomyces sp. OH-5093-protein flexibility and molecular bases of substrate specificity. FEBS J. (2017)

Release Date

2017-07-26

Peptides

Adenylation domain: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Adenylation domain

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