SMTL ID : 5nal.1

The crystal structure of inhibitor-15 covalently bound to PDE6D

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x 8RQ: ~{N}4-[(4-chlorophenyl)methyl]-~{N}1-(cyclohexylmethyl)-~{N}4-cyclopentyl-~{N}1-[(~{Z})-4-[(~{E})-methyliminomethyl]-5-oxidanyl-hex-4-enyl]benzene-1,4-disulfonamide(Covalent)

8RQ.1: 29 residues within 4Å: Chain A: L.17, M.20, L.22, W.32, L.38, A.47, V.49, I.53, L.54, C.56, V.59, R.61, Q.78, V.80, L.87, E.88, W.90, I.109, E.110, A.111, S.115, M.117, V.127, I.129, T.131, F.133, V.145, L.147, Y.149 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:L.22, A:W.32, A:L.38, A:A.47, A:V.49, A:I.53, A:L.54, A:V.59, A:V.80, A:W.90, A:I.109, A:A.111, A:V.127, A:I.129, A:V.145, A:L.147, A:L.147 Hydrogen bonds: A:R.61, A:Q.78 Salt bridges: A:E.88 pi-Stacking: A:W.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martin-Gago, P. et al., Covalent Protein Labeling at Glutamic Acids. Cell Chem Biol (2017)

Release Date

2017-05-10

Peptides

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta

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