SMTL ID : 5nfh.1 (1 other biounit)

Trypanosoma brucei methionyl-tRNA synthetase in complex with a quinazolinone inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.352, R.370 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.352, A:R.352, A:R.370, A:R.370 GOL.2: 3 residues within 4Å: Chain A: P.500, E.501, V.502 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.501, A:V.502 GOL.3: 4 residues within 4Å: Chain A: G.342, Y.343, D.344, R.488 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.343, A:D.344, A:D.344 Water bridges: A:A.345 GOL.4: 2 residues within 4Å: Chain A: H.164, V.165 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.165 Water bridges: A:S.135, A:S.135

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.5: 2 residues within 4Å: Chain A: K.290 Ligands: DMS.6 No protein-ligand interaction detected (PLIP) DMS.6: 5 residues within 4Å: Chain A: F.139, P.214, L.216, Y.295 Ligands: DMS.5 No protein-ligand interaction detected (PLIP)

1 x MET: METHIONINE(Non-covalent)

MET.7: 13 residues within 4Å: Chain A: P.16, I.17, Y.18, Y.19, D.56, W.243, A.246, L.247, Y.250, I.288, H.292, T.318, K.319 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.243 Hydrogen bonds: A:Y.19, A:D.56, A:D.56 Water bridges: A:Y.19 Salt bridges: A:K.319

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torrie, L.S. et al., Chemical Validation of Methionyl-tRNA Synthetase as a Druggable Target in Leishmania donovani. ACS Infect Dis (2017)

Release Date

2017-10-11

Peptides

Methionyl-tRNA synthetase, putative: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Methionyl-tRNA synthetase, putative

Related Entries With Identical Sequence