SMTL ID : 5nfh.2 (1 other biounit)

Trypanosoma brucei methionyl-tRNA synthetase in complex with a quinazolinone inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.80 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: R.352, R.370 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:R.352, A:R.352, A:R.370, A:R.370 Water bridges: A:E.353

1 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2: 5 residues within 4Å: Chain A: F.88, E.89, Y.93, S.94, I.95 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:I.95

1 x 8W2: 2-[3-[[4,6-bis(chloranyl)-1~{H}-indol-2-yl]methylamino]propylamino]-3~{H}-quinazolin-4-one(Non-covalent)

8W2.3: 19 residues within 4Å: Chain A: I.17, Y.19, D.56, H.58, G.59, Q.60, E.137, L.225, V.240, Y.241, V.242, W.243, D.245, A.246, L.247, Y.250, I.288, F.291, H.292 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:H.58, A:L.225, A:Y.241, A:D.245, A:A.246, A:L.247, A:I.288, A:F.291 Hydrogen bonds: A:D.56, A:Q.60 Water bridges: A:I.17, A:I.17, A:Y.19, A:E.137 Halogen bonds: A:Y.250

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torrie, L.S. et al., Chemical Validation of Methionyl-tRNA Synthetase as a Druggable Target in Leishmania donovani. ACS Infect Dis (2017)

Release Date

2017-10-11

Peptides

Methionyl-tRNA synthetase, putative: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Methionyl-tRNA synthetase, putative

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