SMTL ID : 5nou.1

Structure of cyclophilin A in complex with hexahydropyrimidin-2-one

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

3 x L60: 1,3-diazinan-2-one(Non-covalent)

L60.1: 6 residues within 4Å: Chain A: R.55, F.60, M.61, Q.63, F.113, L.122 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.113, A:L.122 Hydrogen bonds: A:R.55, A:Q.63 Water bridges: A:R.55 L60.2: 2 residues within 4Å: Chain A: K.31, Y.79 No protein-ligand interaction detected (PLIP) L60.3: 5 residues within 4Å: Chain A: F.25, L.90, K.91, T.93, I.97 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.25 Hydrogen bonds: A:K.91, A:K.91

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.4: 2 residues within 4Å: Chain A: E.86, N.87 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.86, A:N.87 Water bridges: A:E.86

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Georgiou, C. et al., Pushing the Limits of Detection of Weak Binding Using Fragment-Based Drug Discovery: Identification of New Cyclophilin Binders. J. Mol. Biol. (2017)

Release Date

2017-07-12

Peptides

Peptidyl-prolyl cis-trans isomerase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Peptidyl-prolyl cis-trans isomerase A

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