SMTL ID : 5nq5.1

Mtb TMK crystal structure in complex with compound 1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

homo-dimer

Ligands

2 x 952: 5-methyl-1-[(3~{S})-1-[(3-phenoxyphenyl)methyl]piperidin-3-yl]pyrimidine-2,4-dione(Non-covalent)

952.1: 18 residues within 4Å: Chain A: F.36, P.37, Y.39, A.48, A.49, L.52, A.60, S.62, V.63, M.66, F.70, R.74, R.95, Y.96, S.99, N.100, Y.103, R.107 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.36, A:L.52, A:L.52, A:M.66, A:F.70, A:Y.103, A:Y.103 Hydrogen bonds: A:R.74, A:R.74, A:N.100 pi-Cation interactions: A:R.107 952.2: 18 residues within 4Å: Chain B: F.36, P.37, Y.39, A.48, A.49, L.52, A.60, S.62, V.63, M.66, F.70, R.74, R.95, Y.96, S.99, N.100, Y.103, R.107 11 PLIP interactions: 11 interactions with chain B Hydrophobic interactions: B:F.36, B:L.52, B:L.52, B:M.66, B:F.70, B:Y.103, B:Y.103 Hydrogen bonds: B:R.74, B:R.74, B:N.100 pi-Cation interactions: B:R.107

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Song, L. et al., Structure Guided Lead Generation toward Nonchiral M. tuberculosis Thymidylate Kinase Inhibitors. J. Med. Chem. (2018)

Release Date

2018-03-21

Peptides

Thymidylate kinase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Thymidylate kinase

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