SMTL ID : 5nqz.1 (1 other biounit)

Structure of a fHbp(V1.1):PorA(P1.16) chimera. Fusion at fHbp position 309.

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.63 Å

Oligo State

monomer

Ligands

6 x ZN: ZINC ION(Non-covalent)

ZN.1: 3 residues within 4Å: Chain A: H.97, E.131 Ligands: ACT.6 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.97, A:E.131, ACT.6 ZN.2: 4 residues within 4Å: Chain A: D.195, H.199 Ligands: ACT.7, ACT.8 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Ligand interactions Metal complexes: A:D.195, A:H.199, ACT.7, ACT.8 ZN.3: 2 residues within 4Å: Chain A: H.265, H.267 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.265, A:H.267 ZN.4: 2 residues within 4Å: Chain A: H.266, H.268 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:H.266, A:H.268 ZN.5: 2 residues within 4Å: Chain A: E.233 Ligands: ACT.9 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:E.233, A:E.233, ACT.9 ZN.11: 2 residues within 4Å: Chain A: H.20 Ligands: ACT.12 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Ligand interactions Metal complexes: A:H.20, ACT.12

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.6: 6 residues within 4Å: Chain A: H.97, E.131, G.222, G.223, Q.226 Ligands: ZN.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.223, A:Q.226 Salt bridges: A:H.97 ACT.7: 5 residues within 4Å: Chain A: D.195, K.197, H.199 Ligands: ZN.2, ACT.8 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:K.197 Water bridges: A:K.197 Salt bridges: A:H.199 ACT.8: 6 residues within 4Å: Chain A: H.132, D.195, H.199, V.201 Ligands: ZN.2, ACT.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:V.201 Salt bridges: A:H.132, A:H.199 ACT.9: 2 residues within 4Å: Chain A: E.233 Ligands: ZN.5 No protein-ligand interaction detected (PLIP) ACT.12: 3 residues within 4Å: Chain A: L.18, H.20 Ligands: ZN.11 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.18 Water bridges: A:L.18 Salt bridges: A:H.20

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.10: 2 residues within 4Å: Chain A: H.177, K.179 1 PLIP interactions: 1 interactions with chain A Water bridges: A:K.179

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hollingshead, S. et al., Structure-based design of chimeric antigens for multivalent protein vaccines. Nat Commun (2018)

Release Date

2018-02-28

Peptides

Factor H binding protein,Major outer membrane protein P.IA,Factor H binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Factor H binding protein,Major outer membrane protein P.IA,Factor H binding protein

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