SMTL ID : 5nwh.1

Potent inhibitors of NUDT5 silence hormone signaling in breast cancer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

2 x 9CH: 7-[[5-(3,4-dichlorophenyl)-1,3,4-oxadiazol-2-yl]methyl]-1,3-dimethyl-8-piperazin-1-yl-purine-2,6-dione(Non-covalent)

9CH.1: 12 residues within 4Å: Chain A: W.28, R.51, G.61, R.84, A.96, L.98, M.132, C.139, I.141 Chain B: T.45, W.46, E.47 12 PLIP interactions: 4 interactions with chain B, 8 interactions with chain A Hydrogen bonds: B:E.47, A:R.51, A:R.51, A:R.84, A:R.84 pi-Stacking: B:W.46, B:W.46, B:W.46, A:W.28, A:W.28 Hydrophobic interactions: A:A.96, A:L.98 9CH.2: 12 residues within 4Å: Chain A: T.45, W.46, E.47 Chain B: W.28, R.51, R.84, L.98, M.132, C.139, I.141, E.166, R.196 12 PLIP interactions: 4 interactions with chain A, 8 interactions with chain B Hydrogen bonds: A:E.47, B:R.51, B:R.51, B:R.84, B:E.166 pi-Stacking: A:W.46, A:W.46, A:W.46, B:W.28, B:W.28 Hydrophobic interactions: B:L.98 Halogen bonds: B:R.196

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Page, B.D.G. et al., Targeted NUDT5 inhibitors block hormone signaling in breast cancer cells. Nat Commun (2018)

Release Date

2018-04-04

Peptides

ADP-sugar pyrophosphatase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

ADP-sugar pyrophosphatase

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