- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.93 Å
- Oligo State
- homo-heptamer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-covalent)
- 7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.2: 14 residues within 4Å:- Chain A: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, Q.268, R.310, I.329, N.330, A.331
- Ligands: MG.1
14 PLIP interactions:14 interactions with chain A- Hydrogen bonds: A:R.130, A:R.130, A:T.131, A:T.131, A:G.132, A:K.133, A:T.134, A:T.134, A:Q.135, A:R.170, A:Q.268, A:R.310
- Salt bridges: A:K.133, A:K.133
ATP.4: 19 residues within 4Å:- Chain A: S.317, C.319, L.320, P.321, E.322
- Chain B: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, Q.268, R.310, I.329, N.330, A.331
- Ligands: MG.3
15 PLIP interactions:13 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:R.130, B:R.130, B:T.131, B:G.132, B:K.133, B:T.134, B:T.134, B:Q.135, B:R.170, B:Q.268, B:R.310, A:C.319, A:E.322
- Salt bridges: B:K.133, B:K.133
ATP.6: 18 residues within 4Å:- Chain B: S.317, C.319, L.320, P.321, E.322
- Chain C: F.129, R.130, G.132, K.133, T.134, Q.135, R.170, Q.268, R.310, I.329, N.330, A.331
- Ligands: MG.5
15 PLIP interactions:2 interactions with chain B, 13 interactions with chain C- Hydrogen bonds: B:C.319, B:E.322, C:R.130, C:R.130, C:G.132, C:K.133, C:T.134, C:T.134, C:Q.135, C:Q.135, C:R.170, C:Q.268, C:R.310
- Salt bridges: C:K.133, C:K.133
ATP.8: 20 residues within 4Å:- Chain C: D.316, S.317, C.319, L.320, P.321, E.322
- Chain D: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, Q.268, R.310, I.329, N.330, A.331
- Ligands: MG.7
15 PLIP interactions:13 interactions with chain D, 2 interactions with chain C- Hydrogen bonds: D:R.130, D:R.130, D:T.131, D:G.132, D:K.133, D:T.134, D:T.134, D:Q.135, D:R.170, D:Q.268, D:R.310, C:C.319, C:E.322
- Salt bridges: D:K.133, D:K.133
ATP.10: 20 residues within 4Å:- Chain D: S.317, P.318, C.319, L.320, P.321, E.322
- Chain E: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, Q.268, R.310, I.329, N.330, A.331
- Ligands: MG.9
14 PLIP interactions:12 interactions with chain E, 2 interactions with chain D- Hydrogen bonds: E:R.130, E:R.130, E:R.130, E:G.132, E:K.133, E:T.134, E:Q.135, E:Q.135, E:Q.268, E:R.310, D:C.319, D:E.322
- Salt bridges: E:K.133, E:K.133
ATP.12: 20 residues within 4Å:- Chain E: D.316, S.317, C.319, L.320, P.321, E.322
- Chain F: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, Q.268, R.310, I.329, N.330, A.331
- Ligands: MG.11
14 PLIP interactions:3 interactions with chain E, 11 interactions with chain F- Hydrogen bonds: E:C.319, E:E.322, E:E.322, F:R.130, F:R.130, F:G.132, F:K.133, F:T.134, F:Q.135, F:R.170, F:Q.268, F:R.310
- Salt bridges: F:K.133, F:K.133
ATP.14: 19 residues within 4Å:- Chain F: S.317, P.318, C.319, L.320, P.321, E.322
- Chain G: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, Q.268, R.310, I.329, N.330
- Ligands: MG.13
16 PLIP interactions:13 interactions with chain G, 3 interactions with chain F- Hydrogen bonds: G:R.130, G:R.130, G:T.131, G:G.132, G:K.133, G:T.134, G:Q.135, G:R.170, G:Q.268, G:R.310, F:C.319, F:E.322, F:E.322
- Salt bridges: G:K.133, G:K.133
- pi-Cation interactions: G:R.170
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brouwer, I. et al., Two distinct conformational states define the interaction of human RAD51-ATP with single-stranded DNA. EMBO J. (2018)
- Release Date
- 2018-03-07
- Peptides
- DNA repair protein RAD51 homolog 1: ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.93 Å
- Oligo State
- homo-heptamer
- Ligands
- 7 x MG: MAGNESIUM ION(Non-covalent)
- 7 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Brouwer, I. et al., Two distinct conformational states define the interaction of human RAD51-ATP with single-stranded DNA. EMBO J. (2018)
- Release Date
- 2018-03-07
- Peptides
- DNA repair protein RAD51 homolog 1: ABCDEFG
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G