- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.14 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.1: 11 residues within 4Å:- Chain A: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, E.308, A.331
- Ligands: MG.2
12 PLIP interactions:12 interactions with chain A- Hydrogen bonds: A:R.130, A:R.130, A:T.131, A:G.132, A:K.133, A:T.134, A:Q.135, A:R.170, A:R.170, A:E.308
- Salt bridges: A:K.133, A:K.133
ADP.3: 15 residues within 4Å:- Chain B: F.129, R.130, G.132, K.133, T.134, Q.135, E.163, T.165, R.170, E.308, R.310, I.329, N.330, A.331
- Ligands: MG.4
11 PLIP interactions:11 interactions with chain B- Hydrogen bonds: B:R.130, B:G.132, B:T.134, B:T.134, B:Q.135, B:E.163, B:R.170, B:R.310
- Salt bridges: B:R.130, B:R.130, B:K.133
ADP.5: 13 residues within 4Å:- Chain C: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, R.310, I.329, N.330, A.331
- Ligands: MG.6
12 PLIP interactions:12 interactions with chain C- Hydrogen bonds: C:R.130, C:R.130, C:T.131, C:G.132, C:K.133, C:T.134, C:T.134, C:Q.135, C:R.170, C:R.170, C:R.310
- Salt bridges: C:K.133
ADP.7: 14 residues within 4Å:- Chain D: F.129, R.130, G.132, K.133, T.134, Q.135, E.163, R.170, E.308, R.310, I.329, N.330, A.331
- Ligands: MG.8
13 PLIP interactions:13 interactions with chain D- Hydrogen bonds: D:R.130, D:R.130, D:G.132, D:K.133, D:T.134, D:T.134, D:Q.135, D:Q.135, D:E.163, D:R.170, D:R.170, D:R.310
- Salt bridges: D:K.133
ADP.9: 9 residues within 4Å:- Chain E: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, A.331
- Ligands: MG.10
14 PLIP interactions:14 interactions with chain E- Hydrogen bonds: E:R.130, E:R.130, E:R.130, E:T.131, E:G.132, E:K.133, E:T.134, E:T.134, E:Q.135, E:Q.135, E:R.170, E:R.310, E:R.310
- Salt bridges: E:K.133
ADP.11: 11 residues within 4Å:- Chain F: F.129, R.130, G.132, K.133, T.134, Q.135, E.308, R.310, I.329, A.331
- Ligands: MG.12
8 PLIP interactions:8 interactions with chain F- Hydrogen bonds: F:R.130, F:R.130, F:G.132, F:T.134, F:T.134, F:Q.135, F:R.310
- Salt bridges: F:K.133
ADP.13: 12 residues within 4Å:- Chain G: F.129, R.130, T.131, G.132, K.133, T.134, Q.135, R.170, I.329, N.330, A.331
- Ligands: MG.14
11 PLIP interactions:11 interactions with chain G- Hydrogen bonds: G:R.130, G:R.130, G:T.131, G:G.132, G:K.133, G:T.134, G:T.134, G:Q.135, G:Q.135, G:A.331
- Salt bridges: G:K.133
ADP.15: 13 residues within 4Å:- Chain H: F.129, R.130, G.132, K.133, T.134, Q.135, E.163, R.170, E.308, R.310, I.329, A.331
- Ligands: MG.16
14 PLIP interactions:14 interactions with chain H- Hydrogen bonds: H:R.130, H:R.130, H:R.130, H:G.132, H:K.133, H:T.134, H:T.134, H:T.134, H:Q.135, H:E.163, H:R.170, H:R.170, H:R.310
- Salt bridges: H:K.133
- 8 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 4 residues within 4Å:- Chain A: G.132, K.133, T.134
- Ligands: ADP.1
1 PLIP interactions:1 interactions with chain A- Metal complexes: A:T.134
MG.4: 5 residues within 4Å:- Chain B: R.130, T.131, G.132, K.133
- Ligands: ADP.3
No protein-ligand interaction detected (PLIP)MG.6: 3 residues within 4Å:- Chain C: K.133, T.134
- Ligands: ADP.5
1 PLIP interactions:1 interactions with chain C- Metal complexes: C:T.134
MG.8: 5 residues within 4Å:- Chain D: R.130, T.131, G.132, K.133
- Ligands: ADP.7
No protein-ligand interaction detected (PLIP)MG.10: 5 residues within 4Å:- Chain E: G.132, K.133, T.134, Q.135
- Ligands: ADP.9
No protein-ligand interaction detected (PLIP)MG.12: 5 residues within 4Å:- Chain F: R.130, T.131, G.132, K.133
- Ligands: ADP.11
No protein-ligand interaction detected (PLIP)MG.14: 4 residues within 4Å:- Chain G: K.133, T.134, Q.135
- Ligands: ADP.13
1 PLIP interactions:1 interactions with chain G- Metal complexes: G:T.134
MG.16: 5 residues within 4Å:- Chain H: R.130, T.131, G.132, K.133
- Ligands: ADP.15
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luo, S.C. et al., A RAD51-ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination. Nat Commun (2023)
- Release Date
- 2023-08-30
- Peptides
- DNA repair protein RAD51 homolog 1: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY 3.14 Å
- Oligo State
- homo-octamer
- Ligands
- 8 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 8 x MG: MAGNESIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Luo, S.C. et al., A RAD51-ADP double filament structure unveils the mechanism of filament dynamics in homologous recombination. Nat Commun (2023)
- Release Date
- 2023-08-30
- Peptides
- DNA repair protein RAD51 homolog 1: ABCDEFGH
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H