SMTL ID : 5o09.1

BtubABC mini microtubule

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-8-8-8-mer

Ligands

16 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 17 residues within 4Å: Chain A: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 17 PLIP interactions: 17 interactions with chain A Hydrogen bonds: A:Q.11, A:A.12, A:G.100, A:G.101, A:G.143, A:G.144, A:T.145, A:T.145, A:T.145, A:T.145, A:G.146, A:S.179, A:S.179, A:E.183, A:N.206, A:N.228, A:N.228 GDP.2: 20 residues within 4Å: Chain A: E.256 Chain B: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain B Hydrogen bonds: B:Q.11, B:C.12, B:N.100, B:S.139, B:G.142, B:G.143, B:S.144, B:G.145, B:D.178, B:D.178, B:E.182, B:N.205, B:N.205, B:Y.222, B:N.226, B:N.226 pi-Cation interactions: B:Y.222 GDP.3: 17 residues within 4Å: Chain D: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 17 PLIP interactions: 17 interactions with chain D Hydrogen bonds: D:Q.11, D:A.12, D:G.100, D:G.101, D:G.143, D:G.144, D:T.145, D:T.145, D:T.145, D:T.145, D:G.146, D:S.179, D:S.179, D:E.183, D:N.206, D:N.228, D:N.228 GDP.4: 20 residues within 4Å: Chain D: E.256 Chain E: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain E Hydrogen bonds: E:Q.11, E:C.12, E:N.100, E:S.139, E:G.142, E:G.143, E:S.144, E:G.145, E:D.178, E:D.178, E:E.182, E:N.205, E:N.205, E:Y.222, E:N.226, E:N.226 pi-Cation interactions: E:Y.222 GDP.5: 17 residues within 4Å: Chain G: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 17 PLIP interactions: 17 interactions with chain G Hydrogen bonds: G:Q.11, G:A.12, G:G.100, G:G.101, G:G.143, G:G.144, G:T.145, G:T.145, G:T.145, G:T.145, G:G.146, G:S.179, G:S.179, G:E.183, G:N.206, G:N.228, G:N.228 GDP.6: 20 residues within 4Å: Chain G: E.256 Chain H: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain H Hydrogen bonds: H:Q.11, H:C.12, H:N.100, H:S.139, H:G.142, H:G.143, H:S.144, H:G.145, H:D.178, H:D.178, H:E.182, H:N.205, H:N.205, H:Y.222, H:N.226, H:N.226 pi-Cation interactions: H:Y.222 GDP.7: 17 residues within 4Å: Chain J: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 17 PLIP interactions: 17 interactions with chain J Hydrogen bonds: J:Q.11, J:A.12, J:G.100, J:G.101, J:G.143, J:G.144, J:T.145, J:T.145, J:T.145, J:T.145, J:G.146, J:S.179, J:S.179, J:E.183, J:N.206, J:N.228, J:N.228 GDP.8: 20 residues within 4Å: Chain J: E.256 Chain K: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain K Hydrogen bonds: K:Q.11, K:C.12, K:N.100, K:S.139, K:G.142, K:G.143, K:S.144, K:G.145, K:D.178, K:D.178, K:E.182, K:N.205, K:N.205, K:Y.222, K:N.226, K:N.226 pi-Cation interactions: K:Y.222 GDP.9: 19 residues within 4Å: Chain B: L.246, E.252 Chain M: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 18 PLIP interactions: 1 interactions with chain B, 17 interactions with chain M Hydrogen bonds: B:E.252, M:Q.11, M:A.12, M:G.100, M:G.101, M:G.143, M:G.144, M:T.145, M:T.145, M:T.145, M:T.145, M:G.146, M:S.179, M:S.179, M:E.183, M:N.206, M:N.228, M:N.228 GDP.10: 20 residues within 4Å: Chain M: E.256 Chain N: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain N Hydrogen bonds: N:Q.11, N:C.12, N:N.100, N:S.139, N:G.142, N:G.143, N:S.144, N:G.145, N:D.178, N:D.178, N:E.182, N:N.205, N:N.205, N:Y.222, N:N.226, N:N.226 pi-Cation interactions: N:Y.222 GDP.11: 19 residues within 4Å: Chain E: L.246, E.252 Chain P: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 17 PLIP interactions: 17 interactions with chain P Hydrogen bonds: P:Q.11, P:A.12, P:G.100, P:G.101, P:G.143, P:G.144, P:T.145, P:T.145, P:T.145, P:T.145, P:G.146, P:S.179, P:S.179, P:E.183, P:N.206, P:N.228, P:N.228 GDP.12: 20 residues within 4Å: Chain P: E.256 Chain Q: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain Q Hydrogen bonds: Q:Q.11, Q:C.12, Q:N.100, Q:S.139, Q:G.142, Q:G.143, Q:S.144, Q:G.145, Q:D.178, Q:D.178, Q:E.182, Q:N.205, Q:N.205, Q:Y.222, Q:N.226, Q:N.226 pi-Cation interactions: Q:Y.222 GDP.13: 20 residues within 4Å: Chain H: K.245, L.246, E.252 Chain S: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 16 PLIP interactions: 16 interactions with chain S Hydrogen bonds: S:Q.11, S:A.12, S:G.100, S:G.101, S:G.143, S:G.144, S:T.145, S:T.145, S:T.145, S:T.145, S:G.146, S:S.179, S:E.183, S:N.206, S:N.228, S:N.228 GDP.14: 20 residues within 4Å: Chain S: E.256 Chain T: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain T Hydrogen bonds: T:Q.11, T:C.12, T:N.100, T:S.139, T:G.142, T:G.143, T:S.144, T:G.145, T:D.178, T:D.178, T:E.182, T:N.205, T:N.205, T:Y.222, T:N.226, T:N.226 pi-Cation interactions: T:Y.222 GDP.15: 19 residues within 4Å: Chain K: L.246, E.252 Chain V: Q.11, A.12, Q.15, D.70, G.100, A.140, G.143, G.144, T.145, G.146, S.179, E.183, N.206, V.224, L.227, N.228, I.231 17 PLIP interactions: 17 interactions with chain V Hydrogen bonds: V:Q.11, V:A.12, V:G.100, V:G.101, V:G.143, V:G.144, V:T.145, V:T.145, V:T.145, V:T.145, V:G.146, V:S.179, V:S.179, V:E.183, V:N.206, V:N.228, V:N.228 GDP.16: 20 residues within 4Å: Chain V: E.256 Chain W: G.10, Q.11, C.12, Q.15, N.100, S.139, G.141, G.142, G.143, S.144, G.145, V.170, D.178, E.182, N.205, L.208, Y.222, N.226, I.229 17 PLIP interactions: 17 interactions with chain W Hydrogen bonds: W:Q.11, W:C.12, W:N.100, W:S.139, W:G.142, W:G.143, W:S.144, W:G.145, W:D.178, W:D.178, W:E.182, W:N.205, W:N.205, W:Y.222, W:N.226, W:N.226 pi-Cation interactions: W:Y.222

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Deng, X. et al., Four-stranded mini microtubules formed by Prosthecobacter BtubAB show dynamic instability. Proc. Natl. Acad. Sci. U.S.A. (2017)

Release Date

2017-07-19

Peptides

Tubulin: ADGJMPSV
Tubulin BtubB: BEHKNQTW
Bacterial kinesin light chain: CFILORUX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
1A

D
2A

G
3A

J
4A

M
5A

P
6A

S
7A

V
8A

B
1B

E
2B

H
3B

K
4B

N
5B

Q
6B

T
7B

W
8B

C
1C

F
2C

I
3C

L
4C

O
5C

R
6C

U
7C

X
8C

Tubulin

Tubulin BtubB

Bacterial kinesin light chain

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