SMTL ID : 5o0k.2 (1 other biounit)

Deglycosylated Nogo Receptor with native disulfide structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: A.34, S.35, S.56, N.59 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.59 NAG.2: 3 residues within 4Å: Chain A: A.131, A.132, N.156 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.131 Hydrogen bonds: A:N.156 Water bridges: A:Q.134, A:N.156 NAG.3: 1 residues within 4Å: Chain A: N.214 No protein-ligand interaction detected (PLIP)

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 7 residues within 4Å: Chain A: Y.11, S.19, P.21, F.40, H.42 Ligands: GOL.5, GOL.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.19 GOL.5: 5 residues within 4Å: Chain A: R.38, F.40, I.62, W.64 Ligands: GOL.4 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.86 GOL.6: 7 residues within 4Å: Chain A: Y.209, Y.231, L.232, R.233, S.258, S.259, S.260 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.209, A:Y.209, A:R.233, A:S.259 Water bridges: A:E.261 GOL.7: 5 residues within 4Å: Chain A: V.9, Y.11, S.19, P.21 Ligands: GOL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.19, A:S.19

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.8: 1 residues within 4Å: Chain A: N.235 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pronker, M.F. et al., Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-10-18

Peptides

Reticulon-4 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Reticulon-4 receptor

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