SMTL ID : 5o0l.1

Deglycosylated Nogo Receptor with native disulfide structure 2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.51 Å

Oligo State

homo-dimer

Ligands

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: A.34, S.56, R.58, N.59 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:R.58 Water bridges: A:N.59 NAG.2: 3 residues within 4Å: Chain A: A.131, A.132, N.156 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.131, A:A.132 NAG.3: 3 residues within 4Å: Chain A: N.213, N.214, D.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.236 NAG.5: 4 residues within 4Å: Chain B: A.34, S.35, S.56, N.59 No protein-ligand interaction detected (PLIP) NAG.6: 3 residues within 4Å: Chain B: A.131, A.132, N.156 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:A.131 NAG.7: 2 residues within 4Å: Chain B: H.190, N.214 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.214

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: R.120 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: K.276 Chain B: Q.188 Ligand excluded by PLIP CL.9: 3 residues within 4Å: Chain A: K.276 Chain B: D.140, H.163 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pronker, M.F. et al., Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-10-18

Peptides

Reticulon-4 receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reticulon-4 receptor

Related Entries With Identical Sequence